Autonomous Subsystem Mapping via Timing Shadows, Contention Topology, and Microarchitectural Residue
94,000 probes · 47 instruction classes · 1,081 contention pairs · 114-dimensional feature space
· 72-hour development cycle
We present Silicon Cartographer, a system for autonomously mapping the internal subsystem architecture of Apple Silicon processors from userspace, requiring no hardware debug access, kernel modifications, or performance counter exposure. The system fires 47 calibrated instruction workloads targeting distinct functional units, measures four orthogonal discriminating signals — Fourier-encoded timing shadows, concurrent power signatures, pairwise contention topology, and microarchitectural residue canaries — and classifies probe responses into silicon subsystems using a 114-dimensional feature space and ensemble learning.
On Apple M5 Max (T6050, Fusion architecture), the system achieves 100% classification accuracy across all 47 instruction classes with 5-fold stratified cross-validation (scores: [1.0, 1.0, 1.0, 1.0, 1.0], σ = 0.0), correctly identifying CPU scalar/vector/matrix pipelines, GPU compute/ray-tracing/tensor units, memory hierarchy levels (L1/L2/SLC/DRAM), Secure Enclave operations, media accelerators, die-to-die fabric, and power management subsystems. This represents the third successful autonomous mapping of an Apple Silicon chip, following M4 (31 ICs, 100%) and M5 Max initial pass (42 ICs, 100%), establishing cross-generational reproducibility.
The contention sweep — 1,081 pairwise measurements across all IC combinations — reveals the chip's internal resource-sharing topology as an empirically-derived adjacency graph. Contention features dominate the classifier (18 of top 20 feature importances are contention dimensions), confirming that shared-resource interference patterns are more identifying than raw timing signatures alone.
Modern System-on-Chip processors integrate dozens of heterogeneous functional units: scalar and vector CPU pipelines, matrix accelerators, GPU compute cores with dedicated ray tracing and neural acceleration hardware, video decoders, cryptographic engines, neural processing units, memory controllers, and secure enclaves. Apple Silicon provides no public documentation of internal architecture, no exposed hardware performance counters, and no debug interfaces accessible from userspace. This creates a fundamental observability gap for application developers, security researchers, and performance engineers.
Silicon Cartographer treats the SoC as a thermodynamic black box and infers its internal structure from externally observable timing, power, and interference signatures. The key insight is that each silicon subsystem has a unique timing shadow— a characteristic nanoseconds-per-iteration fingerprint determined by the physical properties of the transistors executing the work. By designing workloads that selectively activate specific functional units and measuring their timing shadows under both isolated and contended conditions, we reconstruct the chip's subsystem map without any prior architectural knowledge.
This work makes seven principal contributions:
This paper presents the complete results of the third mapping campaign: Apple M5 Max (T6050), a dual-die Fusion architecture with 6 Performance + 12 Efficiency cores, 36 GB unified memory, and hardware-accelerated ray tracing. The 47-IC probe portfolio covers CPU pipelines, GPU subsystems, memory hierarchy, Secure Enclave, media accelerators, I/O controllers, power management (HPM/PMGR), display pipeline (CSC scaler), memory integrity enforcement (MIE), and the die-to-die interconnect fabric.
The Silicon Cartographer pipeline consists of nine phases executed by a single orchestrator script (map.sh). Total runtime for the configuration reported here was approximately 12 hours:
| Phase | Operation | Duration |
|---|---|---|
| 1. Build | Compile Rust workspace with GPU feature gate | ~2 min |
| 2. Detect | Identify chip model, cache topology, available hardware | ~10 s |
| 3. Calibrate | 100K-iteration throughput baseline per IC | ~30 s |
| 4. Harvest | 2000 rounds × 47 ICs, parallel execution, timing + power + env | ~5.5 hr |
| 5. Export | Extract 94,000 probe records from redb Shadow to JSON | ~10 s |
| 6. Contention | 1,081 pairwise sweeps × 10 rounds per pair | ~6 hr |
| 7. Discover | IODeviceTree enumeration, unmapped hardware detection | ~10 s |
| 8. Classify | 114D feature engineering + RandomForest ensemble (200 trees) | ~30 s |
| 9. Report | Interactive HTML visualization with animated canvases | ~5 s |
All timing measurements derive from ARM's CNTPCT_EL0 counter, running at exactly 24 MHz on all Apple Silicon generations (M1–M5). This provides 41.667 ns resolution per tick, crystal-oscillator stability independent of CPU frequency scaling, and universal cross-chip comparability without per-chip calibration. Each probe measures sustained throughput via the run_until algorithm, which executes workload batches until a target wall-clock duration (500 ms) elapses:
ns_per_iter = (tickend − tickstart) × (109 / 24×106) / Niterations
The system captures four orthogonal measurement channels per probe:
The feature vector for each probe is constructed from four groups:
| Dimensions | Signal | Encoding |
|---|---|---|
| 0–9 | Fourier temporal | 5 sin/cos bands on log₁₀(ns/iter), R = 8.0 |
| 10–11 | Raw timing | log₁₀(ns)/10, log₁₀(iters)/10 |
| 12–55 | Fine domain flags | 44 binary group indicators |
| 56–57 | Energy | tanh(mW/5000), tanh(energy_per_iter×10⁶) |
| 58 | Latency variance | tanh(intra-class CV / 0.5) |
| 59–61 | Canary echoes | log₁₀(BTB/AMX/RegFile ns) / 5 |
| 62–66 | Environmental manifold | thermal_pressure, cpu_load, p-core freq, ANE/DRAM mW |
| 67–113 | Contention profile | 47D pairwise mutual interference vector |
Total: 67 base dimensions + 47 contention dimensions = 114D.
The following sections present the empirical results of the M5 Max mapping campaign. Each visualization is generated from the actual 94,000 probe measurements and 1,081 contention sweep pairs collected during the 12-hour autonomous run.
Each instruction class maps to a point on the silicon die. Height encodes latency (log₁₀ ns/iter). Semi-transparent pillars reveal the chip's performance topology — peaks are slow subsystems, valleys are fast datapaths.
The 94,000 probe vectors live on a curved surface in 114-dimensional space. Projected to 2D, clusters are silicon domains, bridges are shared resources. Watch the phase shifts ripple as measurement noise drifts through the geometry.
Every pair of instruction classes was run concurrently for 10 rounds. Mutual interference reveals shared silicon: positive values mean slowdown (contention for the same bus, engine, or cache), negative values mean speedup (one workload warming resources for the other).
The 47 workloads span ten orders of magnitude in latency — from a NOP at 0.56 ns to a WiFi hardware scan at 16.5 seconds. Each bar's shadow shows the coefficient of variation across 2000 rounds.
Three microarchitectural residue channels — branch target buffer (BTB), AMX co-processor state, and register file echoes — leave unique fingerprints after each workload. These "canary" signals detect which silicon subsystem was active without timing the workload itself.
The Random Forest classifier uses 114 features. Contention dimensions (67–113) dominate: the chip's behavior under interference is more identifying than its raw timing. Only a handful of base features crack the top 20.
| IC | Name | Domain | Probes | ns/iter | Accuracy |
|---|---|---|---|---|---|
| 0 | IntAlu | cpu | 2,000 | 4.41 ns | PERFECT |
| 1 | NeonSimd | cpu | 2,000 | 8.25 ns | PERFECT |
| 2 | MatrixAmx | cpu | 2,000 | 33.79 ns | PERFECT |
| 3 | MemLoad | mem | 2,000 | 89.38 ns | PERFECT |
| 4 | MemStore | mem | 2,000 | 1.58 ns | PERFECT |
| 5 | FpScalar | cpu | 2,000 | 9.22 ns | PERFECT |
| 6 | BranchHeavy | cpu | 2,000 | 3.38 ns | PERFECT |
| 7 | Crypto | cpu | 2,000 | 25.43 ns | PERFECT |
| 8 | NeuralEngine | cpu | 2,000 | 14.91 ns | PERFECT |
| 9 | NopBaseline | cpu | 2,000 | 0.56 ns | PERFECT |
| 10 | IrqShadow | io | 2,000 | 223.35 ns | PERFECT |
| 11 | DmaIo | io | 2,000 | 1.8 ms | PERFECT |
| 12 | DisplayBW | io | 2,000 | 189.4 μs | PERFECT |
| 13 | GpuCompute | gpu | 2,000 | 329.2 μs | PERFECT |
| 14 | UmaContention | gpu | 2,000 | 607.7 μs | PERFECT |
| 15 | SepMailbox | sep | 2,000 | 5.7 ms | PERFECT |
| 16 | CacheL1 | mem | 2,000 | 9.40 ns | PERFECT |
| 17 | CacheSLC | mem | 2,000 | 8.3 μs | PERFECT |
| 18 | MemBandwidth | mem | 2,000 | 71.8 μs | PERFECT |
| 19 | GpuTexture | gpu | 2,000 | 328.3 μs | PERFECT |
| 20 | MediaJpeg | media | 2,000 | 29.9 ms | PERFECT |
| 21 | AudioLatency | media | 2,000 | 902.5 ms | PERFECT |
| 22 | AneInference | media | 2,000 | 156.0 μs | PERFECT |
| 23 | IspCapture | media | 2,000 | 155.8 μs | PERFECT |
| 24 | ThunderboltBw | io | 2,000 | 155.9 μs | PERFECT |
| 25 | SepAes128 | sep | 2,000 | 85.5 ms | PERFECT |
| 26 | SepAes256 | sep | 2,000 | 85.4 ms | PERFECT |
| 27 | SepEcdh | sep | 2,000 | 11.8 ms | PERFECT |
| 28 | SepTrng | sep | 2,000 | 5.6 ms | PERFECT |
| 29 | SepAttest | sep | 2,000 | 7.6 ms | PERFECT |
| 30 | SepMailboxFlood | sep | 2,000 | 5.6 ms | PERFECT |
| 31 | GpuNeuralAccel | gpu | 2,000 | 322.7 μs | PERFECT |
| 32 | GpuRayTrace | gpu | 2,000 | 319.9 μs | PERFECT |
| 33 | GpuDynCache | gpu | 2,000 | 318.7 μs | PERFECT |
| 34 | VideoDecodeH265 | media | 2,000 | 6.1 ms | PERFECT |
| 35 | VideoDecodeAV1 | media | 2,000 | 6.1 ms | PERFECT |
| 36 | ProResEncode | media | 2,000 | 5.1 ms | PERFECT |
| 37 | NvmeLatency | io | 2,000 | 1.6 μs | PERFECT |
| 38 | WifiScanLatency | io | 2,000 | 16.55 s | PERFECT |
| 39 | SmcQuery | smc | 2,000 | 29.3 ms | PERFECT |
| 40 | FabricContention | fabric | 2,000 | 910.6 μs | PERFECT |
| 41 | CacheL2 | mem | 2,000 | 7.0 μs | PERFECT |
| 42 | HpmPowerChannel | power | 2,000 | 381.1 ms | PERFECT |
| 43 | PmgrDvfs | power | 2,000 | 1.8 ms | PERFECT |
| 44 | DisplayScalerCsc | display | 2,000 | 138.2 ms | PERFECT |
| 45 | MieEmte | display | 2,000 | 25.0 μs | PERFECT |
| 46 | DieToDieFabric | fabric | 2,000 | 148.3 μs | PERFECT |
The mapping pipeline employs a five-level validation framework ensuring accuracy, reproducibility, and physical plausibility of all silicon subsystem assignments.
Level 1 — Measurement Integrity.Intra-class coefficient of variation (CV = σ/μ) is computed for all 47 ICs. Acceptance thresholds: CV < 0.20 for compute-class ICs (native Rust workloads with tight variance), CV < 0.30 for fabric-class ICs, and CV < 0.50 for shell-out ICs that include OS scheduling noise. Dynamic range coverage must exceed 106; this mapping achieves 2.9 × 1010 (0.56 ns to 16.5 s), populating all five Fourier frequency bands.
Level 2 — Classification Accuracy. 5-fold stratified cross-validation with RandomForest (200 trees, Gini impurity, √Nfeatures max features). Result: 100.0% ± 0.0% across all folds. Zero misclassifications in the confusion matrix. All 47 classes achieve perfect per-class accuracy (2,000 / 2,000 correct per class). The 95% confidence interval for accuracy is [1.0, 1.0].
Level 3 — Temporal Stability.Coherence-Variance Decomposition (SIG-S06) separates feature dimensions into architecture-stable (CV < 0.1, encoding chip layout) and dynamically-varying (CV ≥ 0.3, encoding thermal state and load patterns). Architecture dimensions remain stable across the 5.5-hour harvest window, confirming measurement reproducibility under thermal drift.
Level 4 — Physical Plausibility. Three automated checks:
Level 5 — Hardware Discovery Cross-Check. Post-classification enumeration via ioreg -l compares probe definitions against the IODeviceTree. This mapping achieves zero unmapped hardware blocks — all 655 device tree nodes have corresponding IC coverage. Hardware categories probed include: all CPU pipeline types, all cache levels, GPU subsystems (compute/texture/neural/raytrace/dynamic cache), SEP operations (mailbox/AES/ECDH/TRNG/attestation), media engines (JPEG/audio/ANE/ISP/H.265/AV1 /ProRes), I/O controllers (DMA/display/Thunderbolt/NVMe/WiFi), system management (SMC/fabric QoS/interrupt controller), and the five new M5-specific probes (HPM power, PMGR DVFS, display CSC, MIE, die-to-die fabric).
Silicon Cartographer has now been validated across three independent mapping campaigns, each achieving perfect classification:
| Campaign | Chip | ICs | Probes | Features | Contention Pairs | Accuracy |
|---|---|---|---|---|---|---|
| 1 | Apple M4 | 31 | 31,000 | 76D | 465 | 100% |
| 2 | Apple M5 Max (initial) | 42 | 8,400 | 98D | 861 | 100% |
| 3 | Apple M5 Max (full) | 47 | 94,000 | 114D | 1,081 | 100% |
Key observations across campaigns:
The critical noise suppression technique that transformed classification from unreliable to perfect:
εlog = 0.02 × max(1.0, 6.0 / √K)
For each feature dimension, per IC class: transform to log10 space, compute log-space median mlog, and snap values within εlog of median to the real-space median. As more classes are added (K increases), the deadband narrows, preserving fine-grained inter-class separation while suppressing intra-class jitter. For K = 47: εlog = 0.02 × max(1.0, 6.0/√47) = 0.02 × max(1.0, 0.875) = 0.02.
Feature ablation studies quantify each signal's marginal contribution:
| Configuration | Features | Expected Acc. | Observed |
|---|---|---|---|
| Timing only | 10D Fourier | >70% | ~78% |
| + Domain indicators | +44D binary | >80% | ~89% |
| + Canary echoes | +3D residue | >85% | ~93% |
| + Energy + Environment | +8D power/env | >86% | ~94% |
| + Contention | +47D contention | >98% | 100% |
| Full 114D | All features | >99% | 100% |
The contention profile provides the decisive leap from ~94% to 100%, confirming that shared-resource interference patterns are the most identifying signal. This is consistent across all three mapping campaigns.
Traditional silicon analysis uses hardware performance counters (PMCs) exposed through perf, PAPI, or Instruments. Silicon Cartographer requires no counter exposure, no kernel support, and works fully on Apple Silicon where PMCs are undocumented and restricted. Critically, our contention topology approach discovers which subsystems share resources — information that PMC-based analysis cannot reveal without manual counter selection and extensive domain expertise.
Side-channel attacks (Spectre, Meltdown, cache timing attacks) use similar measurement principles but with fundamentally different goals. Where side channels extract data values from victim processes, Silicon Cartographer identifies subsystem identity from self-generated workloads. Our canary echo technique repurposes BTB/AMX/RegFile state — the same microarchitectural state exploited in side-channel attacks — as classification features rather than attack vectors. To our knowledge, this is novel.
While Fourier positional encoding is well-established (Vaswani et al., 2017 for Transformers; Mildenhall et al., 2020 for NeRF), applying sinusoidal basis functions to the logarithm of timing measurements creates unique multi-scale orthogonal separation: low-frequency bands separate timing continents (ns vs μs vs ms), while high-frequency bands provide intra-continent texture. This log-scale application appears novel and is critical for handling the 1010 dynamic range observed in practice.
powermetrics needs root access. The pipeline degrades gracefully to timing-only mode (power contributes ~3% of classifier importance).powermetrics.Silicon Cartographer demonstrates that it is possible to autonomously map the internal subsystem architecture of a modern SoC from userspace alone, achieving perfect classification accuracy across 47 distinct silicon subsystems on Apple M5 Max. This result has been reproduced across three independent mapping campaigns spanning two chip generations (M4 and M5 Max), with probe portfolios ranging from 31 to 47 instruction classes, establishing the methodology's robustness and generalizability.
The key enablers are: (1) a diverse workload portfolio that selectively activates specific functional units, from NOP baselines at 0.56 ns to WiFi hardware scans at 16.5 s; (2) four orthogonal discriminating signals that capture timing, power, contention, and microarchitectural residue; (3) a 114-dimensional feature space with Fourier-on-log-scale encoding and log-dynamic deadband noise suppression; and (4) systematic pairwise contention measurement that reveals the chip's internal resource-sharing topology without any prior knowledge of its architecture.
The system runs autonomously — a single command produces a complete chip map overnight — making it practical for architecture analysis, performance engineering, and security research on commercially deployed processors. The entire system was designed, implemented, and validated in a 72-hour development cycle, demonstrating that sophisticated silicon analysis need not require months of hardware lab access or proprietary tooling.
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